YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23774
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.73
Transmembrane Helix	53	71	0.66
Non-Cytoplasmic	72	106	0.45
Transmembrane Helix	107	130	0.87
Cytoplasmic	131	136	0.37
Transmembrane Helix	137	160	0.87
Non-Cytoplasmic	161	165	0.36
Transmembrane Helix	166	187	0.89
Cytoplasmic	188	194	0.39
Transmembrane Helix	195	218	0.86
Non-Cytoplasmic	219	225	0.41
Transmembrane Helix	226	246	0.93
Cytoplasmic	247	286	0.45
Transmembrane Helix	287	308	0.85
Non-Cytoplasmic	309	322	0.45
Transmembrane Helix	323	342	0.52
Cytoplasmic	343	356	0.86
Transmembrane Helix	357	377	0.95
Non-Cytoplasmic	378	383	0.75
Transmembrane Helix	384	406	0.87
Cytoplasmic	407	415	0.80
Transmembrane Helix	416	439	0.89
Non-Cytoplasmic	440	447	0.88
Transmembrane Helix	448	470	0.92
Cytoplasmic	471	488	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFLYEMVSP RAPKIRRVEA FSEMGQSSEV HPEFGFPQIR KTSSFVFWNR TRLYIMVLTL  60
   61 ACLTFIQMNT LTFNFTVICM EDIVEDYNLL TNYTDTHWFE RNTEKSLLFS GAAIGGLIGL 120
  121 IPAVPLISSL GLGNVQTISG IISAFGAFLF PLAVSIGFYT SLLCRILQGV GSAIMFTTVG 180
  181 VVPGVWAPSN EANTFMAILS CALQLSNIIC MPVSGLLCES ALGWRSIYYL FGGLTFIIYI 240
  241 VFWFTYSDDP KLHRNVSQKE LGKISTGKIE KIKEPVPYLA ICTDPTVLIT WTSCFGGNMA 300
  301 FFALSLYGPT YLREILKFDV RETGFLSALP FILSAIVKFG AGQLSDRMTF LSEKARFVFF 360
  361 AATSQIGFAV GLVVMAFTSD RLIAQIAFNF AIVSSGLNIM GVIKCIQLRC RQHVHFAIAV 420
  421 ISFTAYVVQF LAPIIVSIIC PDNTPEQWTI LFLFITGVII VCNAGFPFIT RSDPAAYTKQ 480
  481 INVENVEK