YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23727
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.43
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTILIQLIV LFTLFHEVNT LVTCSRCEFG NEECNFSRST CRGDFCYHAQ YFYGNEMMPT  60
   61 IQKGCVIGEV APEGCRVNHH GNVMCFCSDA DYCNANYTSL ADTATTILPV QTCQPEKVNN 120
  121 MPKPRWTKPC AANYCTFIEA KTQTEVNSAN YTWSTKDCNK ENEFDFFPTL TVFNFYPGTC 180
  181 VWLNYGGQPD THACYGSDSL DTTLVFDVTT ATTECHVDYF NPRLPYVKSG SSCIGQFCFI 240
  241 SATSRGEVFR GCVNSVTVEG ATPLKIGYTR AYTGLEQWIC DQSYCNADLK SAELSWPPEL 300
  301 YLYRNISNLR EFNVFYIDSA RSSSSIFLAI PIVFLINYCL FH

Type	Start	End	Confidence
Signal Peptide	1	20	0.75
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	323	0.95
Transmembrane Helix	324	341	0.55
Cytoplasmic	342	342	0.55