YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	145	0.78
Transmembrane Helix	146	168	0.90
Non-Cytoplasmic	169	185	0.72
Transmembrane Helix	186	209	0.81
Cytoplasmic	210	262	0.77
Transmembrane Helix	263	285	0.85
Non-Cytoplasmic	286	290	0.57
Transmembrane Helix	291	310	0.77
Cytoplasmic	311	373	0.92
Transmembrane Helix	374	395	0.92
Non-Cytoplasmic	396	401	0.77
Transmembrane Helix	402	423	0.84
Cytoplasmic	424	773	0.99
Transmembrane Helix	774	795	0.89
Non-Cytoplasmic	796	836	0.94
Transmembrane Helix	837	859	0.90
Cytoplasmic	860	914	0.89
Transmembrane Helix	915	934	0.84
Non-Cytoplasmic	935	938	0.61
Transmembrane Helix	939	959	0.92
Cytoplasmic	960	1020	0.96
Transmembrane Helix	1021	1043	0.92
Non-Cytoplasmic	1044	1051	0.72
Transmembrane Helix	1052	1070	0.88
Cytoplasmic	1071	1427	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSDSEEVCL QQSGTGVYEN VVYSKETSDR AKRYAGDTNR KTIGRYSAAV QNLIPLRTTE  60
   61 RNKNNGGSRI DDAGLFSFVT YSWVFPYLYQ AVRGKLDRNQ VWGCSFYDSC GLNMARLEVL 120
  121 WEDEKKANAK SPSLFKVIYR FISTRLWFSC AVFFFCLIFG FIGPTCFIRR LIAFAENPER 180
  181 DEQSRIVYSY GIALVAAISV VEFARVLSYG ATWAVSYRTG IRVRGAVLAL LYKNVLNSKD 240
  241 LCGKTESDVI NIFANDGQRL FDAVTFAPLV LVGPLVLVGG IGYLLMVIGR WSLLGILVFF 300
  301 VFDVIQFGLG KSMVACRNLA IVKTEKRISM MAEIIKYIRI VKMNGWEQIF SAKIDQFRKE 360
  361 EKVQIRKSGY AQSLAIACGP VVPVVAAILT FVGVVLAGND LLASDAFSAI TVYFVMLFGI 420
  421 RMIPYGSRYL AEAVVAMRRI QEYLLLEQYA PYPVTNAEDV VLDCQGATYT YQPKAAKAPV 480
  481 DETKEPTENE VIVVETPVFT CSFDKLSIKR GEHIAVIGAV GCGKSAILKA ISGHMFTTDD 540
  541 ALSVDRSQTV YVPQKAWIFN GTVQDNILFG DKMNSERYYK AVNGCQLTED LTTLSVGDRT 600
  601 EVGERGATLS GGQKARVALA RAVFQTKNLY LFDDIFASLD KKVANKIHEE IIQKLLKKKA 660
  661 LMMVTNNMEL LHHFDRVLFV EGGNIVADGN HDILYEKNDA YKTFVDACET YQATSGATSP 720
  721 CGDGPAQPAP LDAEILRNSS EDLKGDADKL ISDEEDMGNS TIAWRIYKQY IHAAGGWPIW 780
  781 TCLVIGFIVN VVSNIFSTYW LSRWLKKGHD ETTTITNGTE FLEMKTSLAD SPVTGFYAAV 840
  841 YLVALVVLTI SGLFKACVFV KVSLTAATRL HDRMFQAVIH GATSFFDSTP TGRILNRFSK 900
  901 DMDEIDVKLP FTAEVFLQNM ITCLGFLVVI TSVFPYFLLF AIPLFVVFVV FVSCFRAGIR 960
  961 NLKRSEHISR SPLYDHVSAS LEGITTIHTF QQSNRFLEVL KKHLDCNSGA IFMFQSAMRW1020
 1021 LAVWLDLLVV VMTAIVALLT VMLTGTVSPA DAGMAIAFAV QMSGIFQFAV RTQTELEAKM1080
 1081 TSVERVSYYA DNIPEDGEWN TRQGLDIESS WPANGQINFS EVNLRYRKSH PLALNDITFE1140
 1141 IKGGEKVGII GRTGSGKSSL ANLIFRLYPV TNGTIYIDGV DIRTVGLVKL RRGISAIAQD1200
 1201 PSLFSGTVRF NLDPSLEYSD SMIWEALEKC HLKTLVQSLD KKLEADVSHG GNNFSVGERQ1260
 1261 LFCLARALLM KSRIVILDEA TASVDAGTDK LIQEVIKTVF ADATVIIIAH RLDNVRNMDR1320
 1321 IMHLKNGKLI NFTTPQEMFK DDWSVYKLED KDDDQHSAVV VGENSEHSME KSSQGSSQES1380
 1381 DDIVKVENEQ KDSSDDVVHI ESGDDDVKAD SSEVKETSSD TDIEVVQ