YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23643
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVKAVLGDL QIVVERHSDV LRNNALPFRF LVVLRIIGYI ISYLHFARLL LWLHPYQIAS  60
   61 IELWRIATST FCGHNVLDVL WTVWCLHFGT NLVRLNNTNE SLLKLYAITQ GVTTFVIVVF 120
  121 AYLTYILFDS IKFFYIEPLV GMTPICASVM VLMKQFLPDT IVLATPLGRI KYAHLPFLAI 180
  181 FVSFILALTK FTYFVSFLQI TIGVQVSWTY LRFYKPHETD EIYGDGSEHF TWASLFPSRT 240
  241 QLFFTLIGKV CFRTLARMGV CKRQVRHVDL HSLQSGSVGI NLPALENSAK DSERRRQKAL 300
  301 KELNDRLNKT RTAEVASYGN WDDGDDDEPT EVTVVAPPPV SNVHSSKPAM DKESMA

Type	Start	End	Confidence
Cytoplasmic	1	30	0.90
Transmembrane Helix	31	47	0.94
Non-Cytoplasmic	48	65	0.77
Transmembrane Helix	66	88	0.77
Cytoplasmic	89	104	0.76
Transmembrane Helix	105	126	0.93
Non-Cytoplasmic	127	133	0.80
Transmembrane Helix	134	153	0.91
Cytoplasmic	154	171	0.82
Transmembrane Helix	172	194	0.87
Non-Cytoplasmic	195	239	0.84
Transmembrane Helix	240	256	0.48
Cytoplasmic	257	356	0.60