YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	erd-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLFRFTADV AHAIAIVVLL LKIWKSRSCE GISGRSQLLF ALVFVTRYLD LFTNFFSFYN  60
   61 TAMKIFYLVA SFGTVYLMWA KFKATYDRNN DSFRIEFLVI PSMILALLIN HEFIFMEVMW 120
  121 TFSIYLEAVA IMPQLFMLSR TGNAETITAH YLFALGSYRF LYILNWVYRY YTESFFDPIS 180
  181 VVAGIVQTVL YADFFYLYIT RVIQSNRQFE MSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	24	0.77
Cytoplasmic	25	32	0.80
Transmembrane Helix	33	51	0.83
Non-Cytoplasmic	52	61	0.67
Transmembrane Helix	62	80	0.93
Cytoplasmic	81	92	0.84
Transmembrane Helix	93	114	0.86
Non-Cytoplasmic	115	118	0.76
Transmembrane Helix	119	138	0.81
Cytoplasmic	139	146	0.74
Transmembrane Helix	147	168	0.83
Non-Cytoplasmic	169	178	0.71
Transmembrane Helix	179	199	0.89
Cytoplasmic	200	213	0.84