YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7498657
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFDFESVNR SFLRFKLHIY LINITFSAML GFFGPLYEQL VGMLRKQQGQ LAFDTIDRVN  60
   61 AWFTPFVLVA MTLAISCKQY FGQPIKCWTP REFSGSWDGY VHDFCFIENT YFVPNGTEVT 120
  121 DEARGGRHIN YYRWVPLVLL FQAAMFVLPY HLWNLFHKRT TINLKGSLRF FEGALKKLEP 180
  181 AQACESFAGE IWNRLSDIRN SSNKLYGFQA TINYFLLKLG FIVNCILQMV LLKHFLDVDD 240
  241 YFWGFFHLWN VEFKGTAEKE DSIFPRIVLC DFKVRNLGQQ HQHTVSCIMI LNMIIEKLYI 300
  301 CFYFWLIFVF VVTTAGMIHF AFQILFRRHS LIPTNLNNKN KMNPTRSHEF IKDYLNFDGC 360
  361 LLLTYVDAQF GAFRTSQVID GLVHRFTNEL DSDSSAVTSL NEDHPERYVA FNTDTIPMDR 420
  421 YARKHHSLIE EVDGPSAPPA NEEKKEI

Type	Start	End	Confidence
Cytoplasmic	1	16	0.89
Transmembrane Helix	17	37	0.90
Non-Cytoplasmic	38	60	0.85
Transmembrane Helix	61	82	0.87
Cytoplasmic	83	131	0.88
Transmembrane Helix	132	153	0.86
Non-Cytoplasmic	154	213	0.81
Transmembrane Helix	214	232	0.83
Cytoplasmic	233	298	0.84
Transmembrane Helix	299	322	0.92
Non-Cytoplasmic	323	447	0.86