YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE23561
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.61
Transmembrane Helix	8	29	0.71
Cytoplasmic	30	49	0.71
Transmembrane Helix	50	67	0.85
Non-Cytoplasmic	68	78	0.58
Transmembrane Helix	79	100	0.73
Cytoplasmic	101	121	0.87
Transmembrane Helix	122	144	0.85
Non-Cytoplasmic	145	237	0.89
Transmembrane Helix	238	255	0.91
Cytoplasmic	256	316	0.84
Transmembrane Helix	317	342	0.77
Non-Cytoplasmic	343	358	0.75
Transmembrane Helix	359	383	0.79
Cytoplasmic	384	395	0.75
Transmembrane Helix	396	413	0.81
Non-Cytoplasmic	414	451	0.80
Transmembrane Helix	452	473	0.93
Cytoplasmic	474	480	0.71
Transmembrane Helix	481	497	0.82
Non-Cytoplasmic	498	522	0.86
Transmembrane Helix	523	543	0.93
Cytoplasmic	544	823	0.98
Transmembrane Helix	824	843	0.89
Non-Cytoplasmic	844	862	0.84
Transmembrane Helix	863	883	0.87
Cytoplasmic	884	895	0.66
Transmembrane Helix	896	915	0.92
Non-Cytoplasmic	916	922	0.76
Transmembrane Helix	923	942	0.72
Cytoplasmic	943	959	0.76
Transmembrane Helix	960	982	0.88
Non-Cytoplasmic	983	1077	0.85
Transmembrane Helix	1078	1100	0.92
Cytoplasmic	1101	1155	0.91
Transmembrane Helix	1156	1177	0.86
Non-Cytoplasmic	1178	1184	0.85
Transmembrane Helix	1185	1207	0.89
Cytoplasmic	1208	1226	0.81
Transmembrane Helix	1227	1247	0.90
Non-Cytoplasmic	1248	1258	0.81
Transmembrane Helix	1259	1277	0.89
Cytoplasmic	1278	1295	0.73
Transmembrane Helix	1296	1318	0.84
Non-Cytoplasmic	1319	1383	0.90
Transmembrane Helix	1384	1406	0.89
Cytoplasmic	1407	1687	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWPPLNYIIL ANDVIVTLIF IGEAAVTINQ NGLFDNQNSY LRDRWYQFEF FLLINHILSC  60
   61 VIHIYELCSI WFPALNFVYY PWLGALRSAR PFIFLRFIRS IVRFKLPKNR IKLIIKRSSQ 120
  121 QIQNVTIFFM FFVFSYAIMG VQLFGRLNYH CVVNGTDPNN VTIADLAIPD TMCSQKGAGG 180
  181 YECPGNMVCM RLQLKPQEEG FYGQFSDFAS SLFTVYLAAS QEGWVYVLYD CLDSLPSFLA 240
  241 FFYFVTLIFF LAWLVKNVFI AVITETFAEI RVQFSEMWQT REATTDHVYT QKLEKDEDGW 300
  301 KLVEVDKYNR AHSNNSLFLH TIVTSTAFQT VMQLLILANA IFHATFVFYH DESDQIRKIW 360
  361 YYYVEVGFTI LFNTEVIIKI YAFGWKAYIA RGQHKFDCIL CVGSSLNAIW VLYETNIFTY 420
  421 FQVFRIARLI KASPMLEDFV YKIFGPGKKL GGLVIFTGIL LIVTSAISLQ LFCYVPKLNK 480
  481 FTNFAVAFMS MFQIITQEGW TDVVIEILRA CNEQAVPFVA IYFVAYHLLV TLFVLSLFVA 540
  541 VILDNLEMDE ELKKVKQLKA REQDTIKTTL PMRLRIFNRF PTAPTMVTMK KVSSEFPLPK 600
  601 IRDSFTRQFA DEFVETSDDT IQEIGFKVRS MLSGRGPSKE TRITTTIRHV GQLSNKTILT 660
  661 SMLTESNRNR ALFSESNQHL ASLTRSNTSS KHGKSGALST NSRSRTRGLA SLKGKHMVEG 720
  721 FKENGDLRPE DTARKVEKHG EIDFKALQMK RAHAEITRNR IEEEMRENHP MFDRPLFLVG 780
  781 RESSLRRMCQ LIAHSRHSYD QNDGQHRKHS NKYKQFHDFL AIMTYMDWTM VLVTTLSCCS 840
  841 MLWESPWPTT GENLIFNNFY LQIAEYIFVL VMSFELIVKC IANGLFFTPK ALVTDVGDIL 900
  901 TIFIYITSLM FLIWMPNHIE INSWAQLLMV CRAMRPLRVY ALIPHIRRVV VELCRGFREI 960
  961 LLVTILLVVL MFIFASFGVQ LVGGKLASCN DPMITSRENC TGLYDVKLFV TRMEVYGKND1020
 1021 NLMHPSIIVP RVWTNPRNFN FDHIGNAMLA LFETLSYKGW NVVRDVLYLR HGAWAVLFIH1080
 1081 IYVFIGCMIG LTLFVGVVVA NYTENRGTAL LTVDQRRWHD LKARLKMAQP LHVPPKPPES1140
 1141 AKLRCYLYDL TTSRWFKQLF AVLVVVNSFT LVIPWNVSEE QDRKTFLLCL TVISAICNIL1200
 1201 FTLECLLKMI AFTLSGFWQS RRNRIDFIIT ILGINWIVFH FLFQLPAYFA GGITEWKRLT1260
 1261 YTYGYLVVIL RFFTIAGRKS TLKMLMLTVV MSMVRSSFII AAMFLLVLFY ANAGVVLFGM1320
 1321 VKYGQAVGKH VNFRNGREAL VVLFRSVTGE DWNDIMHDCM RAPPFCNWHP GLSYWQTDCG1380
 1381 NYVGAIVYFC SFYLIITYIV LNLLVAIIME NFSLFYSSEE DALLSYADIR NFQLVWNMVD1440
 1441 IEQKRSIPVR RVKFLLRLLK GRLEVNDESD GLLFKHMCHE MERLHNGDDV SFHDVLNMLS1500
 1501 YRSVDIRKSL QLEELLQREE LEYIIEEEVA KHTIRAWLEN CLKNIKAKQN NTLGKMSSIG1560
 1561 STFAFPQSQE VLTKGVVLTE ASPEEDSLQG DKGSGKKKAQ RGNSITEIVA EAQKKSVKRA1620
 1621 TDKISERRGT LRQMQMGTYD ELEEVEEDED TDGEIRRSSF EYSGVDMIQM SHEKQLEDVK1680
 1681 TWWTLCD