YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ncx-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.81
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	69	0.86
Transmembrane Helix	70	92	0.82
Cytoplasmic	93	129	0.73
Transmembrane Helix	130	150	0.66
Non-Cytoplasmic	151	165	0.81
Transmembrane Helix	166	187	0.92
Cytoplasmic	188	197	0.83
Transmembrane Helix	198	218	0.94
Non-Cytoplasmic	219	230	0.74
Transmembrane Helix	231	250	0.84
Cytoplasmic	251	702	0.87
Transmembrane Helix	703	725	0.87
Non-Cytoplasmic	726	740	0.53
Transmembrane Helix	741	759	0.53
Cytoplasmic	760	775	0.43
Transmembrane Helix	776	801	0.79
Non-Cytoplasmic	802	807	0.42
Transmembrane Helix	808	833	0.85
Cytoplasmic	834	847	0.48
Transmembrane Helix	848	871	0.84
Non-Cytoplasmic	872	880	0.43

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKLKIYLFL VVSLTTLGQY AAEPQNGEII HVSSQRIPGP EPACAPAKPC SPGVIVPVWQ  60
   61 PSENLSECKI WFRAIVYLIA LAYLFFGVSI VADRFMASIE VITSQQKSVK MKKITGEHFT 120
  121 IMVRVWNETV SNLTLMALGS SAPEILLSVI EICGNNFEAG ELGPSTIVGS AAFNLFIIIA 180
  181 VCIMAIPNGE TRRVQHNGVF WVTVVWSTFA YVWLYLILSV FSPGEVEVWE GVLTFVFFPL 240
  241 TVGSAYFADA HAGQFGQRLI SGPLSSFVRR SPRRSPSKKT RENVENGAGL PGDATQNLIG 300
  301 GDADALAFEI HRRHYLDIFK QLRSEHPDAP VVELEKHAME KVVGEQKKSR AFYRIQTTRK 360
  361 MIGSGDIQKK LKKSNKLEPM VVQKTMATVE FDPPHYTCLE NVGDVYLTVK CDRGSVPEDT 420
  421 TVTVHYRTIA DTAQAESDFV HTEGTITFEP GQTEQKIKVG IVDNDIYEDD EQFMVRLSQV 480
  481 RAFRSEHFSS VPARLGLAAT ATVIIVDDDH AGSFGFLSEK FKCTESCGSF VAEVIRSRGA 540
  541 RGKVSIPYKT VDGAAKSPQD YEHQEGVLKF ADEQSKAEIY IPIVNDDEYE KHEDFYIELG 600
  601 EPIWHRELAD DEEGIEGKPI LGFSRCKVVI TEDREFKNFM DRALVTANTS IMVGTSSWKQ 660
  661 QFTEAWTLEP EEEDGEVTTM EKVMHYIALP WKLLFALIPP TDYFNGWLCF VVAIAMIGLL 720
  721 TAFIGDIAAA FGCTVGLKDS VTALTLVAMG TSLPDTFASR TAAVGDQWAD GSIGNVTGSN 780
  781 AVNVFLGIGI AWMIAACVHA YRGTKFLVAT GSLAFSVTMF LIGSVVCVAL LQYRRFNRKV 840
  841 NGELGGPMGW RIISAGIFVS VWLLYILLST LEAYCIIKGF