YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22930
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSATKLSSK ADEAKKQKVF VAMGEDLFEK PANSRSTFNS IILFTLTALT FYIIGSLVQQ  60
   61 RTSESLPTRF QWETPIHMDR TTEEFLDWRE KGIVGPVKDQ GKCNASHAFA ITSSIESMYA 120
  121 KATNGTLLSF SEQQLIDCND QGYKGCEEQF AMNAIGYLAT HGIETEADYP YVDKTNEKCT 180
  181 FDSTKSKIHL KKGVVAEGNE VLGKVYVTNY GPAFFTMRAP PSLYDYKIGI YNPSIEECTS 240
  241 THEIRSMVIV GYGIEGEQKY WIVKGSFGTS WGEQGYMKLA RDVNACAMAT TIAVLTEIFL 300
  301 RVLVSNFCCI SLTVLFKMYH NQSFKCFSGE HPIFFKLYHL CTWRG

Type	Start	End	Confidence
Cytoplasmic	1	36	0.94
Transmembrane Helix	37	58	0.87
Non-Cytoplasmic	59	345	0.96