YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aqp-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSDSSCSSS DRSFKFPFDT TDALSIHELA VKDLPKPDAE NPFSVAMHSP PGSPPFAVDR  60
   61 KSVDNSVVAV TDTPFEFAPS QKSSQHTNRP PPFVKPEEEM MYINHVERLK PKFAIGNELI 120
  121 RAFLAELFCT GFLVFGGECV NAQYVLSQGK NNEWIGISVG WGLVLMLAVL MGSKISGAHL 180
  181 NPAVSFFQLT QGKINLIRFL VYAVAQNIGA FLGAFGVFCV YYDAINVFEG GNRTVTGPTA 240
  241 TASIFATYPG PFLGTFNAIV DQIAGTLVLC LGVAAITDRR NGIPAFLQPA WIGALLAFLG 300
  301 MSLALNAGYA INPARDFAPR LFNLCAGYGW EVFSYRNYKW FWIPIICPMI GGVLGAWLYE 360
  361 FFIGFHIQDE DAVSLDSESD KQLKTMIDNM VDIENQLPEY TDKKQLSDIA SIHQNPSLRN 420
  421 I

Type	Start	End	Confidence
Cytoplasmic	1	118	0.97
Transmembrane Helix	119	140	0.80
Non-Cytoplasmic	141	153	0.78
Transmembrane Helix	154	178	0.84
Cytoplasmic	179	198	0.86
Transmembrane Helix	199	221	0.90
Non-Cytoplasmic	222	257	0.85
Transmembrane Helix	258	277	0.91
Cytoplasmic	278	288	0.78
Transmembrane Helix	289	311	0.87
Non-Cytoplasmic	312	339	0.86
Transmembrane Helix	340	359	0.96
Cytoplasmic	360	421	0.86