YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	aat-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.90
Transmembrane Helix	21	45	0.83
Non-Cytoplasmic	46	54	0.68
Transmembrane Helix	55	77	0.90
Cytoplasmic	78	91	0.80
Transmembrane Helix	92	116	0.79
Non-Cytoplasmic	117	141	0.84
Transmembrane Helix	142	164	0.91
Cytoplasmic	165	174	0.84
Transmembrane Helix	175	196	0.93
Non-Cytoplasmic	197	216	0.95
Transmembrane Helix	217	238	0.89
Cytoplasmic	239	249	0.88
Transmembrane Helix	250	269	0.91
Non-Cytoplasmic	270	301	0.89
Transmembrane Helix	302	323	0.89
Cytoplasmic	324	347	0.88
Transmembrane Helix	348	367	0.83
Non-Cytoplasmic	368	372	0.70
Transmembrane Helix	373	394	0.87
Cytoplasmic	395	405	0.82
Transmembrane Helix	406	426	0.93
Non-Cytoplasmic	427	431	0.78
Transmembrane Helix	432	453	0.91
Cytoplasmic	454	541	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIEDLPTV GDVAATRHQM GLWSCMSYVI ANIIGAGIFI TPGTVLKLAL TNGMALVVWL  60
   61 GCGLISLIGG ICYIELGTSI RDPGCDFAYN VYVGWEGIAF SFMWVGVIMS FPASAAVQAQ 120
  121 TFGQYIVAGL SPIWHLGSPY DVILERGLGF ALIIILTVLN LYAIDKYASK FQIFVTIAKL 180
  181 LSLAIIIVTG FWYLIVKGET EHFKDAFTPL PNEKYDIGQI SLAFYGALWS FAGWDILNYG 240
  241 TPEIKNPRRT MPIALLGGIS AVTLVYMAMN VSYMTVLDTE TLKNSSAVAA DFARITLGDF 300
  301 SYAIPFMISI LLIGTLNSNI FCGSRFTHAA AREGHLPTFL SCINAESNSP RAALLFQLIC 360
  361 TIAVTFVDTE SLITYVTFVM FGQRVFTMAA LLWIRYRNIP VHPDAIRVPL IFSILFFMIT 420
  421 IALVVTPFIE DFTTTIVGVG LVLMGFLLYM IFMKPKQLPG FLYRFNDGIT RVTCKILFTT 480
  481 PDLKHASEIE TLKSDGELNR GETLSSRFHN ESVVSNDERT TLSTSQIDTA AAGTAEPMTR 540
  541 L