YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22401
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	27	0.99
Transmembrane Helix	28	50	0.92
Non-Cytoplasmic	51	61	0.65
Transmembrane Helix	62	80	0.93
Cytoplasmic	81	93	0.82
Transmembrane Helix	94	114	0.93
Non-Cytoplasmic	115	158	0.93
Transmembrane Helix	159	179	0.89
Cytoplasmic	180	184	0.76
Transmembrane Helix	185	207	0.91
Non-Cytoplasmic	208	220	0.90
Transmembrane Helix	221	240	0.88
Cytoplasmic	241	258	0.79
Transmembrane Helix	259	281	0.91
Non-Cytoplasmic	282	307	0.88
Transmembrane Helix	308	330	0.90
Cytoplasmic	331	351	0.85
Transmembrane Helix	352	370	0.93
Non-Cytoplasmic	371	377	0.64
Transmembrane Helix	378	396	0.92
Cytoplasmic	397	576	0.99
Transmembrane Helix	577	596	0.91
Non-Cytoplasmic	597	601	0.73
Transmembrane Helix	602	621	0.93
Cytoplasmic	622	635	0.90
Transmembrane Helix	636	656	0.94
Non-Cytoplasmic	657	661	0.87
Transmembrane Helix	662	681	0.95
Cytoplasmic	682	721	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLQKMLR TRRVDEQFLR HSEWARRLGV PLMVALAGIK SISMMLFIIL PFSLTQVAGP  60
   61 STVLAPIFAF LIIFFSAAHL SELSCTMPKN CVQYHFAYAV IGELPAFVIA WISLVDYVAQ 120
  121 AGLFCKAWAD HFNLLFRGLP AKSLTFDVFS TDSMLLSPQV DLLTVLSAII TLCLLLCSLR 180
  181 VVGTICVSLL AVTLLIAASC TMVAFFHSDP ENWIKAEFFH FGYQGVLYAI CALCACYTGI 240
  241 ESTSCLLEET KNPRKRISGV LSFLVLVLTT IFFVLSITFS LSTNVTALSE GIMIPEVFSV 300
  301 INIPAAKYML SVCSVCALSG GVLASFLPAT RVIAALCHDR LIPYAKDTST KSPYFAVLLC 360
  361 TVLVALCSMI QKTMLLNFVI FMAPVKLVIT ILLVYLQHYY PEQIGIPEET SNYKSIGKKR 420
  421 TRVHIDDGVS IDDSVSLIPS RHLEDHDDQS EVSHSTFDTT AFLYMKATKM ESERLQKRLE 480
  481 KEQLENEELQ PVLAKSVSQY HTMDPNLKKA KKIKKHAHNC VAEQCGAEND DDFNSQEVHL 540
  541 FANEEPELPF FSTFSSSAPR PPSPDVSFAT FHRSRRLLFL FCVVTCAFSA FLRNYAVPTV 600
  601 TCWMLSIGFV LVIVVFTVNI NRLQTNDYLY KKESKVTLFP TTSLFTLFML LGSFAGSVPT 660
  661 KTLAHLVVIP LIGILAYFLY GYRHSKHRKT ACLVIENRYL EGADEQYCPI IGLDTSSSSD 720
  721 A