YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22331
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERLNMCQLY LLHLFFLYVC CWIVGTSALG RAEYTCSHEK TINLDKDATR EMSDHDKLMK  60
   61 YRTVQWCDNT SLKYSRFQIL HSNALRIFID SAVGSNAILS KLLFEDVKNT TIKKQKHNFK 120
  121 QRKKYRTFEN VFEKFREKTL NLELFFACFN TCIFRSNRIF FNSAANLNFA TILVFFLIFW 180
  181 QFFDFLEASK CTDCIASGKH WCVTVNECGF SPCATSISKS LNCPELPDKA HAYDDNFVRT 240
  241 KIVPLAASAL NPNPEKCFKP RLPTMTLSKK FSANCSEVGP QSNCFSFTSF DTTQKVLVMS 300
  301 FRGTDSPLQL TDEILDFFTG KKQFFPDAGN IFTYFYDAFF FLWNAGLQQD IRQLKYKYPD 360
  361 YELWVTGHSL GGALASVAAS YVVHTGIFTS DKVKLVTLGQ PRTGDYDYAT WHDKNFPYSF 420
  421 RIVHRRDLVA HIPPQDGADK LFHHRSEVWY NNNMSTTEPY HICAEADGFY CSSRELDTNI 480
  481 ADHLTYFGVF IPGWQTKC

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.42
Transmembrane Helix	9	30	0.68
Cytoplasmic	31	158	0.55
Transmembrane Helix	159	180	0.70
Non-Cytoplasmic	181	498	0.83