YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22235
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKKAPCLFG SAIILGLLLA AAGVLLLIGI PIDRIVNRQV IDQDFLGYTR DENGTEVPNA  60
   61 MTKSWLKPLY AMQLNIWMFN VTNVDGILKR HEKPNLHEIG PFVFDEVQEK VYHRFADNDT 120
  121 RVFYKNQKLY HFNKNASCPT CHLDMKVTIP NIVFQKLIDA ADVTIFGVRI KFAIESVLKM 180
  181 VSEAPYITVK VSDALFDGYE DPIIDIVCKN KILQFLCETN SLQRRVGFFY GQNGTTDGIY 240
  241 EVDAGVPSPS KIGHLYTWNN MTEMPEGTWD TKYARMINGT DGQLFSPMLK REDRLTIFVP 300
  301 QICRSIQMEY TKDVAVNGVP SWRYAPPLDL YDPALPQNRA FCNKNGMPRY FDNTTVQIEN 360
  361 CLPAGLIDLS RCQAGNPRVY LSNPHFYNSP MELWHSVTGL SVPTASNDLT VVDIEPTAGV 420
  421 PTQAKRIMQI NVGMVKGSLS VTENTTNVVV PVLWMNETAY FDQGTRDQLI NIFNAKHYSF 480
  481 IGGVISLSLG LIAWLAVFVV IIVYSRQSDE EEYGRLVLED EDEEPAQDEN AVLA

Type	Start	End	Confidence
Signal Peptide	1	23	0.82
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	479	0.98
Transmembrane Helix	480	503	0.88
Cytoplasmic	504	534	0.94