YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22129
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDDGAAEA EATVRVPMNI ALVKYWGKRD DLLILPLNDS ISLTVDRLTA ETTIRMVPGV  60
   61 GKHTVEINGK SVELSSNKRY QTVFDEALRL QRKRKEAEAS SADSNGNDPP PIFYHFHVTS 120
  121 TTNFPVAAGL ASSAAGFAAI ALAIQRILRL DDSQANRLAR IGSGSACRSM YGGLVHWRKG 180
  181 EMDDGSDCLA VRTEAAANWE DLYCIILVFD DGRKKVGSSE GMRRSRETSQ LLKHRIESIV 240
  241 PQRIQQIQEA YTSRNFEQLA RVIMADSNQF HAVCMDSTPP IRYLNEASWQ LIDTVEEFNI 300
  301 GGIRAAYTFD AGPNACVIVQ KENASQFLKA VLQTIQVPSE DLQVIGKELA EQFDVPAEPT 360
  361 TKCSKLIMSP MGGGPQE

Type	Start	End	Confidence
Cytoplasmic	1	121	0.50
Transmembrane Helix	122	144	0.60
Non-Cytoplasmic	145	377	0.82