YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE22128
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQDDGAAEA EATVEINGKS VELSSNKRYQ TVFDEALRLQ RKRKEAEASS ADSNGNDPPP  60
   61 IFYHFHVTST TNFPVAAGLA SSAAGFAAIA LAIQRILRLD DSQANRLARI GSGSACRSMY 120
  121 GGLVHWRKGE MDDGSDCLAV RTEAAANWED LYCIILVFDD GRKKVGSSEG MRRSRETSQL 180
  181 LKHRIESIVP QRIQQIQEAY TSRNFEQLAR VIMADSNQFH AVCMDSTPPI RYLNEASWQL 240
  241 IDTVEEFNIG GIRAAYTFDA GPNACVIVQK ENASQFLKAV LQTIQVPSED LQVIGKELAE 300
  301 QFDVPAEPTT KCSKLIMSPM GGGPQE

Type	Start	End	Confidence
Cytoplasmic	1	70	0.52
Transmembrane Helix	71	93	0.69
Non-Cytoplasmic	94	326	0.75