YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	eat-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKIAFFTL ILLVSIERVY SSDEEYRLLK DLREGYDPVE RPVADHRKPV NVKLRLILQQ  60
   61 LVDVDERNQV ITLVVWNQYT WNDYKLRWSP EEYGNITTLQ IPHGTLWKPD ILLFNSANEH 120
  121 FDASFPVHMV VSSNGDVLFA PPGIVSFSCS LSMTWFPYDQ QVCYLKFGSW TYGKKLDLQI 180
  181 DDSDLPDGHK MDLQYYIPNG EFDLLATPAF RKSTTFLDET YVELYFHMHL KRRTMYYGLN 240
  241 WIVPSILISL SNILGFTMPP ECGEKITLQI TNFLSVMVFL AMVSEVAPPT SESIPIIAAF 300
  301 FSLSIVILGL SICASLIIVN IFFRHPKTHR MGDWTRYVFL EWLPWFLLMS RPEHTFCRPR 360
  361 REEEKNDEEA GGDGTKLLEN QQHQPRPRLL VNSQLVMDST VPYLEEIIGY LKVFKAKLDD 420
  421 DEEEEEEILN WRFMAMVIDR LSLFLFTGLI FGTTALIFAF CPNLFTDSPI VDIE

Type	Start	End	Confidence
Signal Peptide	1	21	0.97
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	235	0.97
Transmembrane Helix	236	256	0.93
Cytoplasmic	257	265	0.81
Transmembrane Helix	266	287	0.85
Non-Cytoplasmic	288	296	0.79
Transmembrane Helix	297	322	0.91
Cytoplasmic	323	440	0.98
Transmembrane Helix	441	461	0.95
Non-Cytoplasmic	462	474	0.90