YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pisy-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPTAAENNN NVWLFYPNLI GYGRIVLAIL AMYYMSSAPW CAMFCYALSA GLDAFDGWAA  60
   61 RTYNQSSRFG AMLDQLTDRC ALLALVMALC KFYPDHLFLL QLSAVIDIAS HWLHLHATDL 120
  121 SGATSHKQSS NWLLNLYYTD RLFLGFMCGG NEAFYILLYI RAFWAGPLIF NFHFMSIFPL 180
  181 IAFPIAFVKS AISVVHLYTA AEMVVAHDVK LRVEAAQKAQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.67
Transmembrane Helix	12	35	0.69
Non-Cytoplasmic	36	37	0.41
Transmembrane Helix	38	59	0.60
Cytoplasmic	60	96	0.55
Transmembrane Helix	97	115	0.49
Non-Cytoplasmic	116	141	0.52
Transmembrane Helix	142	163	0.81
Cytoplasmic	164	168	0.43
Transmembrane Helix	169	193	0.77
Non-Cytoplasmic	194	220	0.48