YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21934
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLCKCPKRK VTNLFCYEHR VNVCEFCLVD NHPNCVVQSY LTWLTDQDYD PNCSLCKTTL  60
   61 AEGDTIRLNC LHLLHWKCFD EWAANFPATT APAGYRCPCC SQEVFPPINE VSPLIEKLRE 120
  121 QLKQSNWARA ALGLPTLPEL NRPVPSPAPP QLKNAPVMHK EVPVHNNRSS TPATHLEMED 180
  181 TASYSVSNND VTFARKKNYG AESSSDTRPL LQLRDADNEE NKYKRRPTMD WMRGLWRAKH 240
  241 GGSGVPQERA SAKKIALFVI FLAVLALITI IMVMKRAGYS GEHSSDPLFD PMANPNIRVA 300
  301 VEDSRLPHV

Type	Start	End	Confidence
Cytoplasmic	1	254	0.60
Transmembrane Helix	255	274	0.94
Non-Cytoplasmic	275	309	0.57