YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21884
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	26	0.93
Non-Cytoplasmic	27	60	0.89
Transmembrane Helix	61	81	0.91
Cytoplasmic	82	91	0.90
Transmembrane Helix	92	114	0.91
Non-Cytoplasmic	115	126	0.84
Transmembrane Helix	127	149	0.87
Cytoplasmic	150	159	0.89
Transmembrane Helix	160	178	0.80
Non-Cytoplasmic	179	185	0.62
Transmembrane Helix	186	206	0.92
Cytoplasmic	207	244	0.79
Transmembrane Helix	245	266	0.92
Non-Cytoplasmic	267	281	0.72
Transmembrane Helix	282	301	0.69
Cytoplasmic	302	308	0.41
Transmembrane Helix	309	327	0.41
Non-Cytoplasmic	328	328	0.27
Transmembrane Helix	329	347	0.83
Cytoplasmic	348	365	0.61
Transmembrane Helix	366	389	0.79
Non-Cytoplasmic	390	396	0.72
Transmembrane Helix	397	419	0.88
Cytoplasmic	420	475	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVYTTIFLY ALTSSVFFPV FQSLIFYKAC ITLSNSTEPE IACKSKETYA RDNSVHSMSS  60
   61 VILMASSTGL CVSAFFTSRW VGHLSDVKSR KLAFLIPFIG LFISDFTILI QVLYPRLSPY 120
  121 YFIVSEVIYG FFGGYMSITS GAFSIVSTMH SDQRERAKGI ARLEGTISLG STVGFLISSQ 180
  181 LKNFGYLGAA SFFLVAHFIA FMSAVFMRDP EKPDLQEKCV KRKPFCHGTD LLKDKKPPTS 240
  241 TNLKILYFSF ACSYFAFIGS TRILFFYLKH RFFWGAEEFG YLKAMNTGMT TIMSLALYPF 300
  301 LKNLGITDIR LAIFGLLTRS IGRAWYAVAW EGWTVFIVVF FEMFSKFPAT AMRSSIATNV 360
  361 GEHERGLAFS LVAVIEALCN LTSSWVFHLA WPLSLNVFPQ LSFVIMPIII LPAITLMILN 420
  421 MRYLEAPELN PEDLTTSIKK SDDISENVNV HDPEALPVLH HIPTETDTLT DSTSA