YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	bre-2
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQSRRASSR VNRLVVIFII VASGFLLLYK NTQQFTQIDR ECIQDEWQEN NNLGNTIDDG  60
   61 SNFRIAFTDI QQNYTWLHLP NFLENSEILM IVSSNCDNFA RRNILRKTWM NPENSQIIGD 120
  121 GRMKALFLVG INGADEKLNA VVLEEAKVFG DMIVIDLEDN YLNLSYKTIS LLLYSISKTK 180
  181 SPNLIGKIDE DVLFYPDQLT PLINDKTINT STFSIYGEKY EAGVAVNHGE DNAKWQISKN 240
  241 SFKCSVYPSY LSGPTYFLTR KAAKRIVEAT KHRKFISVDV EDVFITGLLA GDVGIKKNQL 300
  301 PFMYMIEEAT NDRESYEILA WHTKKRDQQY IEAFESLKLN RCKSCRKSKN PDLEELKEK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.88
Transmembrane Helix	11	29	0.91
Non-Cytoplasmic	30	359	0.99