YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11280669
Protein type:	Globular with Signal Peptide
Type Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNTNYISCF LIFFSHLLLI KCGTGSIAYS AKIYLSNVCK NFQKCLDGPR PLLDENLSIF  60
   61 SCQRGCPDTF FCENQLCCPN TTAISSLNRP AAAGKPNLGS RSTKAVEFQL ESSTELERTL 120
  121 PCERYPYKLS CKNDTSQPIA KWYFDIQTLS CELYPFGQCE DDPLDKLALR TRGECEERCD 180
  181 VAKVKAAIAG NSKFQINSVS SENIEREAPV APPTDPQIAI DDVIQESKHI RGRPFAIEPP 240
  241 TDLVHVIHVK SDRFPAKNLE KSIYTQEIQE KSENLAEIDE NLLLTSTMED GATVPTVTSN 300
  301 ILEILEDALE EGSGSLESLE KSGNSGEKLE ENRKNRRKSV KSLEHSFEQF YQRNKESVSC 360
  361 SATAYRLLCS SGASSQFVYR WEKVGGVCQS FPYGYCLKEQ NVAHPRTREE CEQFCD

Type	Start	End	Confidence
Signal Peptide	1	30	0.80
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	416	0.99