YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-109
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDTREKAYK AVTYSAVTFS FLAILSVCIS MPIIYNFVDS IHQQTKRDMT FCKSTARDIM  60
   61 SEISHKKPIA AAIAGNLTTI RNKRQAVGCA GCCKPGHPGR PGLPGRNGKP GVPGAPGRPG 120
  121 TPGRPPIVCE EQDVPPCNPC PPGPPGPQGP TGNSGQPGRP GNPGRPGSPG TPGPVGPNGA 180
  181 SGDSGAPGND GEKGEPGRPA QSTPSTPGEP GNPGDAGATG APGDDGAPGR DGQPGQSGPP 240
  241 GPPGPPGNVG EAGPPGKPGQ PGLPGPQGER GICPKYCALD GGVFFEDGTR R

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	291	0.97