YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21371
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.97
Transmembrane Helix	18	40	0.90
Non-Cytoplasmic	41	71	0.92
Transmembrane Helix	72	92	0.94
Cytoplasmic	93	99	0.85
Transmembrane Helix	100	119	0.96
Non-Cytoplasmic	120	128	0.77
Transmembrane Helix	129	151	0.89
Cytoplasmic	152	158	0.80
Transmembrane Helix	159	180	0.91
Non-Cytoplasmic	181	191	0.87
Transmembrane Helix	192	211	0.97
Cytoplasmic	212	246	0.98
Transmembrane Helix	247	272	0.77
Non-Cytoplasmic	273	283	0.80
Transmembrane Helix	284	306	0.74
Cytoplasmic	307	324	0.81
Transmembrane Helix	325	344	0.97
Non-Cytoplasmic	345	350	0.84
Transmembrane Helix	351	373	0.90
Cytoplasmic	374	390	0.84
Transmembrane Helix	391	410	0.90
Non-Cytoplasmic	411	418	0.73
Transmembrane Helix	419	438	0.96
Cytoplasmic	439	469	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEKGSTLVP FLADRQRYII LAIGTLCIAA IASNMTVINF TMICMAKPVN SSALTSNVEA  60
   61 DNLAYSNKQK SIIMWAAAVG TLAAAWPFHW FYTQFGARSV FFAAGVVSTL STAVMPLAAE 120
  121 VHFNFLVVAR FFQGVSFGAD FAAIGLIVVN WASLKQHGLF ISLLSSFSQI SVMFTMPVAG 180
  181 ELCESTWGWQ SVYYVHAVLS GVLFTAWLYF YRDNPTKHPQ MTEIELEKIH RGKGDVKEHE 240
  241 KAPIAKILTN SVMLAVWLSA FGELMMSQFI VMYGPTFLKE VLGFAVNHTG YFVAVPRALH 300
  301 LAFKIISGVA SDRIQFWSEK TKMRIFNTIA LMVSGAFFCI LGYLPKEQAH LSLVALLVIE 360
  361 CSTGFICGGF YKCATLVARQ HSHFVLSQIQ FIKCLSLFIE PLLVFLICSH NTLEEWRIVF 420
  421 LTHGILLIVG NIIFCYFATD EPADFTRSAT GEEMTDVPPE RRRLTENEA