YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21354
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCGAKLNLS EFSINTEPLL TISSEMIVLI TLLLFAIPIL CNKVELRSPR VTTFGDWNSW  60
   61 ARCRDGEFAY AIQVKVEGKQ GSRGDDTGLN AVALYCRPLG SDAISRNNKI MSGEAPWGGW 120
  121 GGIKYCPNNK VLIGFTLRSE QNQRDGDDCA ADNFAGYCGT PHGPRNRDSR IQGDGTGWGD 180
  181 WTDDQWCPEG YAVCGIQSQI EKEQGRGDDT AVNNVDLECC QVGVSSCNPG YSLVRIGEYD 240
  241 NRRGAGTVTK EFQQRVSITK TSGVTTTLSN SEKYSVSKAI EAGISATHGM FTAKVNTALT 300
  301 KTSERITTSQ LQRMIQDATT HERIEKITFT VPAWHRVIVE QLIITCGGYE VGIAKTISRS 360
  361

Type	Start	End	Confidence
Cytoplasmic	1	18	0.70
Transmembrane Helix	19	40	0.82
Non-Cytoplasmic	41	360	0.84