YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21306
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.93
Transmembrane Helix	12	32	0.93
Non-Cytoplasmic	33	40	0.64
Transmembrane Helix	41	62	0.90
Cytoplasmic	63	95	0.94
Transmembrane Helix	96	119	0.90
Non-Cytoplasmic	120	130	0.85
Transmembrane Helix	131	153	0.90
Cytoplasmic	154	159	0.95
Transmembrane Helix	160	182	0.93
Non-Cytoplasmic	183	202	0.88
Transmembrane Helix	203	223	0.89
Cytoplasmic	224	236	0.82
Transmembrane Helix	237	258	0.89
Non-Cytoplasmic	259	275	0.91
Transmembrane Helix	276	297	0.91
Cytoplasmic	298	317	0.86
Transmembrane Helix	318	336	0.92
Non-Cytoplasmic	337	343	0.69
Transmembrane Helix	344	365	0.91
Cytoplasmic	366	394	0.95
Transmembrane Helix	395	417	0.90
Non-Cytoplasmic	418	484	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQPHINEKG MSILVTALFI VGETAGGGLI ALPTAIVSTG AVTGAFLLLV AAVVCTYTGI  60
   61 LLAENWTILQ ELYPEYRDHC RKPYPAMGLR AIGPKFAHFV SAMLQVTQFG TAVVFVLLAA 120
  121 KNGENMLHAN FGTHVSFCYM ILIVGLLVFP FTLPKSPKDF WYAVVAAMIS TTISVVLIIF 180
  181 GTVQDYEVCH KEVFYPSFNF SKTLMSFGTI MFSYGGHCAF PTIQHDMKKP HHFSRSIIIA 240
  241 FIIIFIFYLP VSMSGYFVYG SSLTDSIIPS IQNINIQTIV NILISLHVSL ALTITFNPLN 300
  301 QEFEEILNMS HDFGWQRIVA RALVMLSVVF VAESVPNFGV LLDLVGGSTI TMMALVVPIV 360
  361 FNLALTTIKK KKENKDNEEK LTIKEIFQNS DKIKLLANIL ILVFAIFGGV AATTSAMQTM 420
  421 LQSEFSAPCY ARIWSENARI MEEQRQLTFT HGKIACCGMF RNISATGSEV CLDVASMAKA 480
  481 VSHG