YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	fat-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIATKVNTN KKDLDTIKVP ELPSVAAVKA AIPEHCFVKD PLTSISYLIK DYVLLAGLYF  60
   61 AVPYIEHYLG WIGLLGWYWA MGIVGSALFC VGHDCGHGSF SDYEWLNDLC GHLAHAPILA 120
  121 PFWPWQKSHR QHHQYTSHVE KDKGHPWVTE EDYNNRTAIE KYFAVIPISG WLRWNPIYTI 180
  181 VGLPDGSHFW PWSRLFETTE DRVKCAVSGV ACAICAYIAF VLCDYSVYTF VKYYYIPLLF 240
  241 QGLILVIITY LQHQNEDIEV YEADEWGFVR GQTQTIDRHW GFGLDNIMHN ITNGHVAHHF 300
  301 FFTKIPHYHL LEATPAIKKA LEPLKDTQYG YKREVNYNWF FKYLHYNVTL DYLTHKAKGV 360
  361 LQYRSGVEAA KAKKAQ

Type	Start	End	Confidence
Cytoplasmic	1	51	0.84
Transmembrane Helix	52	68	0.54
Non-Cytoplasmic	69	74	0.42
Transmembrane Helix	75	96	0.81
Cytoplasmic	97	202	0.60
Transmembrane Helix	203	223	0.83
Non-Cytoplasmic	224	232	0.61
Transmembrane Helix	233	251	0.85
Cytoplasmic	252	376	0.77