YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE21177
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.87
Transmembrane Helix	8	28	0.83
Non-Cytoplasmic	29	85	0.91
Transmembrane Helix	86	106	0.85
Cytoplasmic	107	114	0.83
Transmembrane Helix	115	136	0.89
Non-Cytoplasmic	137	143	0.68
Transmembrane Helix	144	164	0.92
Cytoplasmic	165	174	0.80
Transmembrane Helix	175	193	0.87
Non-Cytoplasmic	194	204	0.63
Transmembrane Helix	205	225	0.89
Cytoplasmic	226	274	0.95
Transmembrane Helix	275	295	0.91
Non-Cytoplasmic	296	307	0.72
Transmembrane Helix	308	328	0.89
Cytoplasmic	329	336	0.84
Transmembrane Helix	337	357	0.87
Non-Cytoplasmic	358	363	0.65
Transmembrane Helix	364	387	0.78
Cytoplasmic	388	395	0.84
Transmembrane Helix	396	418	0.82
Non-Cytoplasmic	419	425	0.66
Transmembrane Helix	426	446	0.90
Cytoplasmic	447	478	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYGINRFHI CAFITWQFAN FFAGQNIFGI YSNNVSKWKC GDSKPTKDCN IYLSCPKSNL  60
   61 TFVDPPFQSA AIEFDWICGS SVFYQSFFSQ VQYVGVLIGT LLFGSLSDRF GRRPIGILVI 120
  121 SNAICSTFAS GLAPSVKILF PLRFLVGLSI GGMLVVICAW IMEVILPQQR MVVRGFFNWG 180
  181 WTRIFLTSIC YFTREWRLAT YVSSLSLIPA LLLVIFVIPE SPVWLHSRGF KARMIQSEMQ 240
  241 IARIAGVPYV PVQHKLVRPK SLMDTLKTKG MFKKLFILWT MWFIIAICGF ANDLSSGTLA 300
  301 GDLYLNQLFF GILLVFSKML LLFVDTYFTN FKRRTLHQGS QIGTLCCFII LTTFMSMDYH 360
  361 GIGVLIVYLI GTTFIEYTWD ACYLCAIELM ETPSRASATG SCSLIARIGM ILAPFLTYAN 420
  421 TWWSPAVNVT VIVLGSANLL ISYFFLPESK GVNLDDVHVN DDDENVPENT PMVQKVRE