YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sng-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENVRAYGAG LAGANFDKNT FFKKPTVLFR CAALLFGLIL WYSVSKGGWH KPSDAIHPVC  60
   61 LYGRSSSTCS FATAVGFFAV CGAIVLIVLD AKMDQISSVP TRRRAVLADL VVSAIFTAIF 120
  121 LIGFFTFWSK LSAFEVDEDD ENPIKTNNAK FGILSALLSF LAWGGAAFFA WRRYEEGNQA 180
  181 THEPNYDEHF GQVSTDVQDG YGYGGDSTGI GHVGAPPPQS SYQSGAAPQT MQQPPSNPYT 240
  241 QSEGYGY

Type	Start	End	Confidence
Cytoplasmic	1	25	0.97
Transmembrane Helix	26	45	0.92
Non-Cytoplasmic	46	68	0.91
Transmembrane Helix	69	89	0.94
Cytoplasmic	90	105	0.91
Transmembrane Helix	106	128	0.91
Non-Cytoplasmic	129	150	0.94
Transmembrane Helix	151	171	0.93
Cytoplasmic	172	247	0.98