YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	vem-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTVSVTFLH KSFFTMDLSS WFEFTMYDAV FLVVVLGFFF YWLTRSEQPL PAPPKELAPL  60
   61 PMSDMTVEEL RKYDGVKNEH ILFGLNGTIY DVTRGKGFYG PGKAYGTLAG HDATRALGTM 120
  121 DQNAVSSEWD DHTGISADEQ ETANEWETQF KFKYLTVGRL VKNSSEKADY GNRKSFVRGA 180
  181 ESLDSIINGG DEGTKKDN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.61
Transmembrane Helix	21	43	0.91
Non-Cytoplasmic	44	198	0.62