YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ugt-14
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.40
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHVKTLVYFL LFTGFISCKN ILIFNPIFAF SHVKFVTQMA DIIADHGHNV TLFQPYHIAM  60
   61 KNTEGLVKNR KVNIINYYPH DFNTISGAMP ETFSGLWDSK LLNNAILSAY AMPKAIGRVF 120
  121 EKTATQLLQD ESILEELKSR KFEVVISEAF EITEMYLAHL LKIPSIPIKS SVRYPAFNNA 180
  181 FGQPSSLGYL PQQGLSREIG FLDRLLEVYD HYFLVKMQER LNEYQVNFIE KALGHPVPHW 240
  241 RDLVKESPIY ITNSNPYLDF AVPTTATVVH VGGITMDMKK LKNPQQLPDE YEEILQERDS 300
  301 TVLISFGSVV RSCDMPENFK AGVVKMFESL PDITFIWKYE KDDVEFQKKL PKNVHLKKWV 360
  361 PQPSLLADKR FVKRFVTHGG LGSTMEVAYT GKPALMVPIF ADQFNNANML ARHGGAIPYD 420
  421 KLDLADGEKF TKTVREMVIN PKYNDNAKVL LIILLNQPID PKLNLMKHLE FAMEFPNLRS 480
  481 QIPEINNAGL IGYYYLDIIA FFILFACLAL YLFTNLIFKI FRFVPKKTKH D

Type	Start	End	Confidence
Signal Peptide	1	18	0.40
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	490	0.96
Transmembrane Helix	491	514	0.88
Cytoplasmic	515	531	0.86