YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	dpy-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRLLAVLG LFAVGVSGGP TRSSKLVFLN EENWTDLMKG EWMIEFHAPW CPACKDLQKA  60
   61 WNAFADWSDD LGIKVGEVDV TVNPGLSGRF LVTALPTIYH VKDGVFRQYS GARDKNDFIS 120
  121 FVEDKKYRVI DPVPDYKHPN SKQMAVVAVF FKLSMSVRDL HNHLVEDKGI PSWASYGLFA 180
  181 GVTLALGCVL GFFIVIIIDQ VFPTGPRKSQ QAKKTEKKDA KKDSGTESPT KKNGNNNNGK 240
  241 ETKKTK

Type	Start	End	Confidence
Signal Peptide	1	23	0.92
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	175	0.99
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	246	0.91