YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20758
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFCTSEAAVD MDSGRGDIRR LKDGEILKYT SGIFSSKWKK MYAVLFSDSR LVWFENRGDR  60
   61 KPKGSVLLKD VIPYICVGLM TDRMPVKRPN VPEGNSVHHL VGIGMNPKAD PCHWILFSSD 120
  121 SDIESWFTEI TKTLPKPANP PPNAPQQGPG AQPPQQQNNG GYVPPTVYPS APPPVQPGYN 180
  181 PRPASGQSYP SGPQVPPAYG QYPQPGYPQP AGVPTSSHTT VIVRDGGYGG GGYGGYGGGG 240
  241 GGFGSTGLGF GSGILAGSLL GYGLGSMWGG HHSYGGWGGG YGGGGYGMAG GYYSDNDTTV 300
  301 TNNYYNYGDN DNNGGNNHSS SSNAITDAPG NAGDQSQQQS DNNYGNANQD SYDQGNDYGN 360
  361 DYGNAGYDSG DFGGGDYGGG GYDSGDFGGG DFGGGDFGGG DFGGGDY

Type	Start	End	Confidence
Cytoplasmic	1	233	0.60
Transmembrane Helix	234	260	0.51
Non-Cytoplasmic	261	273	0.64
Transmembrane Helix	274	293	0.44
Cytoplasmic	294	407	0.57