YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-107
Protein type:	Globular with Signal Peptide
Type Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKAIVIGA SFFSGVTIIV SLVAAGMLLQ DINDLYYDVM DDMTEFRNTA NEAWKDMIVP  60
   61 SGAVDASLIF GRNKRSGGTC GCGAQPNNCP AGPAGPPGAP GAPGEDGTPG QAGKNGGNGI 120
  121 GIVNSADAGG CIKCPAGEPG PAGPDGPAGA PGADGQPGAP GNAGQDGAPG AAGEQGDAGA 180
  181 AGQDGEAGAP GGPGKNGQRG SGAPGPAGPE GPAGPAGQDG APGQDGAPGN AGSEGPAGAP 240
  241 GKDGEAGAPG QDGEAGGEGI PGQDAAYCPC PPRTAAVEAT PASQGGYRRR FSHV

Type	Start	End	Confidence
Signal Peptide	1	25	0.72
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	294	0.97