YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	art-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGILEVYDA KRTDNLIITL EGISGSETIK AIKKRIAQKK LKLTEERQAL RVEPKGKPLA  60
   61 DDQKLSDLGL SSQKAVLYVR DLGPQIAWKT VFMAEYAGPL FVYPLFYLRP TFIYGQAAVN 120
  121 ATMHPAVQIA FFAWSFHYAK RLFETQFIHR FGNSTMPQFN LVKNCSYYWG FAAFVAYFVN 180
  181 HPLFTPPAFG DLQVYFGLAG FVISEFGNLS IHILLRNLRP AGTRERRIPK PDGNPLSLLF 240
  241 NYVSCPNYTY EVASWIFFSI MVQSLPAIIF TTAGFAQMAI WAQGKHRNYL KEFPDYPKNR 300
  301 KAIVPFVL

Type	Start	End	Confidence
Cytoplasmic	1	85	0.95
Transmembrane Helix	86	107	0.74
Non-Cytoplasmic	108	116	0.66
Transmembrane Helix	117	138	0.77
Cytoplasmic	139	164	0.83
Transmembrane Helix	165	184	0.85
Non-Cytoplasmic	185	193	0.85
Transmembrane Helix	194	215	0.90
Cytoplasmic	216	235	0.85
Transmembrane Helix	236	258	0.55
Non-Cytoplasmic	259	259	0.40
Transmembrane Helix	260	281	0.82
Cytoplasmic	282	308	0.68