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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: pmr-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.73
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIETLTSEQA ASHEVVPCTH QLRTNLEEGL TTAEATRRRQ YHGYNEFDVG EEEPIYKKYL  60
   61 EQFQNPLILL LLASAFVSIV MKQYDDAISI TVAVVIVVTV GFVQEYRSEK TLEQLTKLVP 120
  121 PTCHVLRDGK EAMMLARELV PGDIVLLNTG DRIPSDLRIA ESFSLQIDES SLTGETEPKH 180
  181 KETRSVPAAS ATGSDVEHLT CIAFMGTLVC AGRGRGIVIS TAANSQFGEV VKMMMGEESP 240
  241 KTPLQKSMDD LGKQLSIYSF GVIAVIFLIG MFQGRNVVDM FTIGVSLAVA AIPEGLPIVV 300
  301 AVTLAIGVMR MAKRRAVVKK MPAVETLGCV TVICSDKTGT LTKNEMTAQA IATPEGKLAE 360
  361 ITGIGYSAEG GVVQYQGEQV HQWTHPEFAR IIEAGLVCNN ATIEADKLIG QPTEGAIVVL 420
  421 AKKAQLEGVR SEYKRLREMP FSSDTKWMGV QCADAHGQNV YFIKGALDRV LDQCGTYYSS 480
  481 DNQRKQCDQY SRQHILEIGK ELGQKGLRVL GLARGESMQS LMFLGMIGMM DPPRPGAADA 540
  541 ISIVKASGVD VKLITGDAME TAQSIGQSLG ILSSSDSCLS GQQVDQMSDH DLELVIRQVT 600
  601 VFYRASPRHK LKIVKALQAL GEVVAMTGDG VNDAVALKKA DIGVAMGVCG TDVCKEAADM 660
  661 ILCDDDFSTM TAAIEEGKAI YHNITNFVRF QLSTKLNSTQ TNYKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle