YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|139472325
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKSHPL FKIINHSFID LPAPSNISSW WNFGSLLGVC LMVQILTGLF LAMHYTSDTM  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFLHVGR GLYYGSYTFL ETWNIGIILL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAIVHLLFL HETGSNNPTG LNSNADKIPF HPYY

Type	Start	End	Confidence
Cytoplasmic	1	30	0.91
Transmembrane Helix	31	54	0.89
Non-Cytoplasmic	55	80	0.88
Transmembrane Helix	81	104	0.84
Cytoplasmic	105	111	0.81
Transmembrane Helix	112	133	0.91
Non-Cytoplasmic	134	142	0.69
Transmembrane Helix	143	166	0.83
Cytoplasmic	167	177	0.82
Transmembrane Helix	178	200	0.93
Non-Cytoplasmic	201	224	0.92