YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20251
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYPDDFPIP HVIQPVKVVR HVVKETPIKT PYLDVCPKCQ TTIMTSVTTH IGMCWWLICF  60
   61 FGTFLFCWPI LICLCFDVSK DVDHNCPNCG LLLATSNRAA PNFVSHSDRV KSVDFHSEKP 120
  121 WILTALHTGN VQIWNYDTKT LVKAMEVSEK STRAAKFIHR KNWIATASDD QQIRIFDAET 180
  181 FSLINEFTAH SDFIRSLTVH PTLPYLISAS DDRKIRVWDW ENEWRMEQEF QEHAHYIMQI 240
  241 AVNPEDPEMF VSGSLDKTLK VWKLGEQESI CTLEGHEKGV NCVEFLTGGR IVSGSDDCSI 300
  301 CVWDIQTQKC IETLKNAHKN NVTFVTPFKT WIISGAEDST VKIWNSQTFS LEKELNFEKG 360
  361 RAWCVAAGKS DAIAVGFDSG AVTVEI

Type	Start	End	Confidence
Cytoplasmic	1	51	0.85
Transmembrane Helix	52	72	0.89
Non-Cytoplasmic	73	386	0.91