YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20233
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	27	0.89
Non-Cytoplasmic	28	52	0.91
Transmembrane Helix	53	74	0.84
Cytoplasmic	75	80	0.74
Transmembrane Helix	81	100	0.90
Non-Cytoplasmic	101	105	0.67
Transmembrane Helix	106	127	0.85
Cytoplasmic	128	141	0.85
Transmembrane Helix	142	164	0.91
Non-Cytoplasmic	165	195	0.93
Transmembrane Helix	196	215	0.95
Cytoplasmic	216	248	0.81
Transmembrane Helix	249	268	0.74
Non-Cytoplasmic	269	284	0.80
Transmembrane Helix	285	309	0.90
Cytoplasmic	310	319	0.89
Transmembrane Helix	320	340	0.91
Non-Cytoplasmic	341	358	0.87
Transmembrane Helix	359	380	0.89
Cytoplasmic	381	396	0.89
Transmembrane Helix	397	417	0.87
Non-Cytoplasmic	418	421	0.69
Transmembrane Helix	422	442	0.91
Cytoplasmic	443	468	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQRRFGLLC AVMLGFGQLC MFTGFDAESF ILESVIHSIH EREPERISSY AGYYGQAVIY  60
   61 AFYMISCLFS PSIAAVSTPK INLILAATFF SAFPLGFLFT NSYYYYASSA LVGIGFALFY 120
  121 QGQGGYLTSH STRNTIESNV SISWSVGSCC MILGSAIMAT ITHLSSATTE HIMGSLNVTS 180
  181 EAHKMERQFG ELEINLLFSA FTGISVLGII TFFVMPSKDV ENCIESSSEK KETFLEALKL 240
  241 TCSTLVSPTM LQLFPLFVLS GFNTSFWLSV FPTAMSFTMQ NSKLIYLAAV YSLGVGSGEV 300
  301 IIGLAISFLS KRIKDFGQKP TMTIGAIFIT MYCAMIHMST PYDAPIRPTS KEPLFFGHSY 360
  361 LLALIIGLFC GIGDCCVNSV RSVICALLMP KRRPQAFSVS KIYHAFGSTI LFFMSPITPL 420
  421 YVYTIGLPIL AIIATILFFS ISKRTQIMER KMTEASKNAA EIGKKLNF