YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hsd-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKRLSMRL KKGIHRSWNR MTSLEAGLEE EKEIKIVEEP EPRPWKVLIT GGAGHLAENL  60
   61 VAKLEEMTRD SIRPKIREML EKEMPAVIST KVDKEVEKRL PMYIQIVLVD VLEPRGRVLK 120
  121 HHVAFVKCSF DDECTMKTAL EQVDTVYHLA AVGMTGQYAR DRKACMDINA VGTMNLLIWA 180
  181 RNSGVQRFIY TSSVGVVFSG EPMYNATEEV GYPDDFYNYY CESKAHAERI VQKASGHRMR 240
  241 TTVLRFNGIY GPGEKRVTER VVKFMLTGMW IATCKPNGVE AQTQLSSVAN CIQGLVKAEL 300
  301 ALRWSDTPHG QIYNIMDKTP VGTFSFWTPL NIALGFSSSM ITVPATPIRL FAYLSQIIAD 360
  361 RMRIDPIVSV LEVDLLLVNN TFNIEKAERD LGYEPSVSAI PEIIEHYLHR LPPDVVRPKG 420
  421 RSDFYVKVAV LVLGTILIFV AVFSFTFWMY LIFQRLSRWN PF

Type	Start	End	Confidence
Non-Cytoplasmic	1	331	0.87
Transmembrane Helix	332	353	0.80
Cytoplasmic	354	427	0.86
Transmembrane Helix	428	452	0.90
Non-Cytoplasmic	453	462	0.85