YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lem-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDVEKMSDA ELRAELNVRG ANVGPVTGTT RSLYEKKLKK LLSGGAKTPA RPTVAKPAPK  60
   61 PTPKSAPAPK SPKSPPARRS IPRAAATAAN STINSTFNRS EIEEMSDSDD DMRDDDDDDE 120
  121 EILSPKSKQS SFRSANSTAS SVGRGRPVSS TPNKRLSPVY KPSPVPKNTP RTTSSSSKTT 180
  181 INTTTTRIPS TPRRITSVPG LITDFTPSFS TFGSDRPGAT PPRKSIYTSK VSKVLHDLGN 240
  241 TTGEEDDDDE FEGQETSRII YKTEEPSRRG IVKNAWNKVL GYGFDASKNP GDSYDLRAGA 300
  301 SRIRVQKNPR TGKVTVKQTN IFNEAIYFAL YVILILFVVL GIAYALTTTH RPKTADFSGY 360
  361 WGVLKAAGRD SLNFFYNYAI LPVVSLGIFV VLGAGIYFGH RKYKEAKEQE EAKLYELIER 420
  421 ITELIRESSI DGDPYVSQPH VRDVLFPPAK RRSAELARWE QAVKFIDTNE SRVATDVLVL 480
  481 PSGNECAVWK WIGNQSQKRW

Type	Start	End	Confidence
Cytoplasmic	1	326	0.87
Transmembrane Helix	327	347	0.95
Non-Cytoplasmic	348	377	0.82
Transmembrane Helix	378	399	0.94
Cytoplasmic	400	500	0.90