YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20126
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQAEVINQE RSFYLENNTA PISLASDVKK SGFLSTLASY LTSNAKSDPK PVIQQKKLMN  60
   61 SWDDVDLVKL NILVCNVLYE PHSYELLFRE IERVFGRRRE HCFYGALGVL LTLVLLNDAV 120
  121 GAITAFMTLI IPTFMTVTAI SSTSSYENPS FLKNHQDFFV RYWTVYAVFV TGESFLSSLI 180
  181 HWDLRLFRLI FMSMCLSTRI PVLAATYGNS DKRLVA

Type	Start	End	Confidence
Cytoplasmic	1	101	0.98
Transmembrane Helix	102	135	0.78
Non-Cytoplasmic	136	158	0.53
Transmembrane Helix	159	182	0.81
Cytoplasmic	183	188	0.39
Transmembrane Helix	189	208	0.56
Non-Cytoplasmic	209	216	0.31