YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE20002
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.95
Transmembrane Helix	8	28	0.91
Non-Cytoplasmic	29	84	0.95
Transmembrane Helix	85	106	0.85
Cytoplasmic	107	113	0.77
Transmembrane Helix	114	133	0.93
Non-Cytoplasmic	134	140	0.72
Transmembrane Helix	141	161	0.93
Cytoplasmic	162	173	0.75
Transmembrane Helix	174	192	0.95
Non-Cytoplasmic	193	198	0.76
Transmembrane Helix	199	218	0.92
Cytoplasmic	219	274	0.92
Transmembrane Helix	275	294	0.92
Non-Cytoplasmic	295	302	0.92
Transmembrane Helix	303	324	0.88
Cytoplasmic	325	335	0.80
Transmembrane Helix	336	356	0.88
Non-Cytoplasmic	357	361	0.65
Transmembrane Helix	362	383	0.77
Cytoplasmic	384	395	0.64
Transmembrane Helix	396	416	0.75
Non-Cytoplasmic	417	425	0.73
Transmembrane Helix	426	447	0.91
Cytoplasmic	448	480	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWFDINRFHL LVLLTWQFSI FFASQQIFPI FSNYVPQWTC GNGEPTSDCS VYESCKSNLT  60
   61 FVNVAFKSAA MEYDWICGKS AYLKSLFSQI QFAGVLCGTF SFGAVSDVVG RKPVAVFALS 120
  121 LGILMNFVTG LAPNYQVLLG IRFFLGLSVG GTLVVVCTFV MEMLLPQQRM ALRAFFNWGV 180
  181 ARLMMTLIAM ALPEWRMSSI ACAVAALPAL IIIVFVFPES PTWLHNKGRL DEMKKSEKHI 240
  241 AKMAGVPYVP IEHKRIEHSK TVMEMLQTKG LMSRLFVLWS MWFVASICGY ATDLNSNTIS 300
  301 GDLFVNQILF SILIAVSKMI LVVFDTHVPS FRRRTLHQGA QLVVCICFLI LTFMTFNGYT 360
  361 GLAFLIVNLI GTVFIEYTWD ACYLCAVESM ETACRASATG TCSLVARIGA ILAPMLNYAN 420
  421 LWWPPSVYLT VVLLGTINLI ISYFFLVETK NVNLDNVHID PSSEEGTPMI DEKPAQKTSE 480
  481