YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	oac-32
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.88
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	178	0.88
Transmembrane Helix	179	202	0.88
Cytoplasmic	203	249	0.87
Transmembrane Helix	250	271	0.91
Non-Cytoplasmic	272	288	0.93
Transmembrane Helix	289	312	0.91
Cytoplasmic	313	332	0.94
Transmembrane Helix	333	356	0.84
Non-Cytoplasmic	357	404	0.93
Transmembrane Helix	405	427	0.75
Cytoplasmic	428	431	0.51
Transmembrane Helix	432	452	0.85
Non-Cytoplasmic	453	475	0.78
Transmembrane Helix	476	495	0.81
Cytoplasmic	496	503	0.82
Transmembrane Helix	504	526	0.93
Non-Cytoplasmic	527	545	0.93
Transmembrane Helix	546	565	0.93
Cytoplasmic	566	580	0.83
Transmembrane Helix	581	600	0.83
Non-Cytoplasmic	601	616	0.68
Transmembrane Helix	617	637	0.94
Cytoplasmic	638	692	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISQLIFLII LLLNIIPTTS ATWKDVIKPK PLDNLSAQCL NDTNTWINSL EIFGTLYAEC  60
   61 IIMKKCNAKE LKVLRDNLYA VQQLDAFGQF PGAGLLELKT LYDGSYQECQ RVSGKKYDVN 120
  121 YCYLLLTPGK NLPLRIAVCL PDSCNHQDMI DIFNELSPYP FTACSAYCTK NEVKKDTPFW 180
  181 GFSIFLIVMV VIAAIASIVD YVRETVYGLS SQKENNTFFK ILLTFSLWTN AELLLSVKEQ 240
  241 KSGFIKSLDC IRLLSMCWVV TGHSFLYLIL ADTLEPVLDF PTYFWNHLLL NAFVSVDTFF 300
  301 VLSGIVVAYL FFKTKLTKKT ITSPMTWILF YVHRYLRLTP PVMLFIGFFT VYTPYIQGAF 360
  361 SASELNQMAP QAAACKTLWW QNLLYINNFD DGNSQNSTCY GITWYLAVDT QLYLVAPIVL 420
  421 VALYFSFAAG TAIIVAGCVG SIITTYILFG VYNVPADIIG NGDQTKFFNI AYSKPWIRCP 480
  481 PYLVGLLTGY LLATYGSRKI RLNWALAIAG WITAFVIAGF CLFATYDYDK GAHWSTFTRA 540
  541 TFYNFHRLGW GVFVCWVVGA NHMGWGGPID KFMSHPIWQP FGRLSYCAYI VHWMVLYYYL 600
  601 NVGGVLHYSS AWQVFTYIAI PATLLSYVLA FFWSCLFEVP ILKLEKMLIE KLIGGGGRTS 660
  661 LKVEDLGKNI GKVPDEEAEN EKVQCEALRI NI