YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	srz-66
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTIRTPIF LVSSLRLKAW NHHNHNASKP YVHTESDIYT VILSKSEYVA NFLIVAYFVF  60
   61 LPFYVYVNKV NRRRDEKMII FPITNHFYKM VMISVIFLIF YTALSTLVEH GNLKEGNILA 120
  121 IIGFMILTVF YTICMSIQVF QLFIVALAIE RFLLYFCPST EKLITLVQNY VHQRIKCIYI 180
  181 SCAIKDLVIF ILPYSSDPEA MHYSMEILII LSSLLYLPIM ISVRKLSHLA SAEQNHPQRY 240
  241 IFWQTMVVLI FKSLTLPASA IALTNDGTLT ETQNAQMNIE IFTIPLIIML SYLGCNKRNL 300
  301 TVTFTSFNLK YFLRTIFSFD DAVVQPQTLV GSVYAVSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.78
Transmembrane Helix	48	67	0.92
Cytoplasmic	68	85	0.76
Transmembrane Helix	86	108	0.88
Non-Cytoplasmic	109	117	0.73
Transmembrane Helix	118	145	0.80
Cytoplasmic	146	174	0.67
Transmembrane Helix	175	194	0.66
Non-Cytoplasmic	195	201	0.78
Transmembrane Helix	202	221	0.91
Cytoplasmic	222	239	0.89
Transmembrane Helix	240	263	0.88
Non-Cytoplasmic	264	276	0.86
Transmembrane Helix	277	295	0.80
Cytoplasmic	296	338	0.82