YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE19825
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.93
Transmembrane Helix	10	30	0.92
Non-Cytoplasmic	31	50	0.89
Transmembrane Helix	51	72	0.92
Cytoplasmic	73	79	0.73
Transmembrane Helix	80	97	0.95
Non-Cytoplasmic	98	102	0.84
Transmembrane Helix	103	123	0.94
Cytoplasmic	124	142	0.91
Transmembrane Helix	143	161	0.97
Non-Cytoplasmic	162	177	0.91
Transmembrane Helix	178	196	0.97
Cytoplasmic	197	226	0.93
Transmembrane Helix	227	247	0.88
Non-Cytoplasmic	248	263	0.87
Transmembrane Helix	264	286	0.94
Cytoplasmic	287	295	0.84
Transmembrane Helix	296	317	0.92
Non-Cytoplasmic	318	334	0.88
Transmembrane Helix	335	354	0.92
Cytoplasmic	355	452	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISTETTNV LRLSISIVIL FSAVLAHEFI MEPLIAALAT AGRGGIEHRD GYLALCLIYF  60
   61 FNTISCFFAP YVVSKLSGKW AMVAGMMTII IVHSSYFLPN RYFILIASSI GGFGATFIWV 120
  121 GQGQYIIENV SDENREKNTS IQWALYKMSL IIGGIFFFFY FQNEPIEAIA KNGQMEKFFM 180
  181 VFLACIVISI INTCFLPQSE MSRNRVSQPF FQTTKNCFKL LKTQRMISLA VFFFYTGLVR 240
  241 SFWISIYPFC IKFTSNLASN TTRILTIGMI VTGCGQVIGS IFVAIIGNKI RKFGQHVLIL 300
  301 GALILHVILF LMISLSFPND APLHHTDGNG PVFPLSVYLA MAISALLGFG DAILQTQIYS 360
  361 YIAKYYQRDS SSVFSIFRFS SKPLSWFFRF QTMLAANHNN RSRLFHWLEN SWNNRQINFQ 420
  421 LFYSLCYLRK FFEAKNGKMK TGFLRHFKDL IN