YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148225350, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYSGVPSVT LIVGCGLSCL ALITLAVVYA VLWRYIRSER SIILINFCLS IICSNILILV  60
   61 GQTQTHNAGI CTMTTAFLHF FFLASFCWVL TEAWQSYMAV TGKVRTRLIR KRFLCLGWGL 120
  121 PALVVAISMG FTKAKGYGTP QYCWLSLEGG LLYAFVGPAA AVVLVNMVIG ILVFNKLVSR 180
  181 DGILDKKLKH RAGQMSEPHT GLTLKCAKCG VVSTTALSAT TASNAMASLW SSCVVLPLLA 240
  241 LTWMSAVLAM TDKRSILFQI LFAVFDSLQG FVIVMVHCIL RREVQDAFRC RLRNCQDPIN 300
  301 SDATGTFPNG HAQIMTDFEK DVDIACRSAL HKDMGSCRAA TITGALSRIS LNDEEEEKGP 360
  361 EGLNYSTLPG NIMSKVIIQQ PSGLHMSMGV GDLGEQRLDS TADMRRTVYL CTDDTTRQSE 420
  421 QELSAHDLSG HPQPGQMETD YIVLPRSSGA VVSGAGSSSV PTLLKEESKM SMMDSLSHDR 480
  481 LMHYKMGAEF NLGPSGMEHM GMEHQYPVQA EHMQNLPFEP RTAVKNFLAE MEESGGLSRS 540
  541 ETGSTISMSS LERRKSRYQD LDFEDKAMPN KNPWESFNPA SEYQNYATMN VLESDTKNSL 600
  601 EMTNAEWEKC VNLPLDVQEG DFQTEV

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.92
Transmembrane Helix	9	33	0.92
Cytoplasmic	34	41	0.93
Transmembrane Helix	42	61	0.96
Non-Cytoplasmic	62	69	0.76
Transmembrane Helix	70	91	0.86
Cytoplasmic	92	112	0.84
Transmembrane Helix	113	132	0.95
Non-Cytoplasmic	133	151	0.90
Transmembrane Helix	152	174	0.91
Cytoplasmic	175	200	0.90
Transmembrane Helix	201	220	0.47
Non-Cytoplasmic	221	225	0.39
Transmembrane Helix	226	249	0.86
Cytoplasmic	250	255	0.47
Transmembrane Helix	256	279	0.85
Non-Cytoplasmic	280	626	0.57