YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|141795496, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	62	0.96
Transmembrane Helix	63	82	0.90
Non-Cytoplasmic	83	91	0.80
Transmembrane Helix	92	114	0.88
Cytoplasmic	115	131	0.87
Transmembrane Helix	132	154	0.84
Non-Cytoplasmic	155	220	0.93
Transmembrane Helix	221	241	0.92
Cytoplasmic	242	249	0.86
Transmembrane Helix	250	272	0.88
Non-Cytoplasmic	273	295	0.89
Transmembrane Helix	296	320	0.82
Cytoplasmic	321	331	0.90
Transmembrane Helix	332	355	0.88
Non-Cytoplasmic	356	392	0.92
Transmembrane Helix	393	416	0.87
Cytoplasmic	417	435	0.86
Transmembrane Helix	436	454	0.96
Non-Cytoplasmic	455	467	0.80
Transmembrane Helix	468	490	0.92
Cytoplasmic	491	510	0.91
Transmembrane Helix	511	532	0.93
Non-Cytoplasmic	533	548	0.87
Transmembrane Helix	549	571	0.88
Cytoplasmic	572	609	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGSENKTV STSSKFALQQ LGEGKEEEEL ARTTTDRAEA TRLAKVEQQA AEPRETWGRR  60
   61 LEFVLATIGY AVGLGNVWRF PYLCYRSGGG AFLIPYMIML FLCGIPLLFM EFTVGQYTRL 120
  121 GPVHALAQIC PLFKGVGLAT VVISYVLCTY YNVLMTWALY YLLHSFSPSL PWQSCNNTWN 180
  181 TVANCSTGFP GNATHLQSAS QQFFDHKVLE MTSGIERAGG VRWELFGLLV LAWGIVYFCI 240
  241 FKGVKSTGKV VYFTATFPYF ILFALLVNNV QLPGAKNGIL FFLMPNWSKL LEVQVWVNAA 300
  301 AQIFNSIGIS FGSMISMASY NKYNNNILRD TFIVSLANSA TSIVAGFVIF SAIGYMAHIH 360
  361 NLPVDDIATD GPGLVFVVYP EVFSTMPVSQ LWAPLFFIML LCLGLDSQFA MVEVAVTFIM 420
  421 DGFGRKALKV FKRKELIVLA VCSFGFLLGI PHITRGGIYV FQLMDHYTAV VSLMFLAFFE 480
  481 VLAVTLIFGV KRLSVMVENM LGKKPNLFFR ICWQYLSPML VLGILISSIV QYTPARYGKS 540
  541 YTYPLWAELL GWFISLVSII WIPLGALHEL WTTEGSLLQR LKKSITPTVD LESVSEKPST 600
  601 ESIALFNAP