YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|141795782, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.90
Transmembrane Helix	42	61	0.87
Non-Cytoplasmic	62	70	0.79
Transmembrane Helix	71	92	0.94
Cytoplasmic	93	112	0.90
Transmembrane Helix	113	134	0.93
Non-Cytoplasmic	135	191	0.95
Transmembrane Helix	192	212	0.93
Cytoplasmic	213	220	0.82
Transmembrane Helix	221	243	0.87
Non-Cytoplasmic	244	269	0.91
Transmembrane Helix	270	291	0.90
Cytoplasmic	292	301	0.88
Transmembrane Helix	302	324	0.88
Non-Cytoplasmic	325	424	0.93
Transmembrane Helix	425	448	0.88
Cytoplasmic	449	462	0.82
Transmembrane Helix	463	481	0.97
Non-Cytoplasmic	482	496	0.86
Transmembrane Helix	497	518	0.95
Cytoplasmic	519	538	0.96
Transmembrane Helix	539	561	0.94
Non-Cytoplasmic	562	585	0.95
Transmembrane Helix	586	607	0.92
Cytoplasmic	608	676	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSAKPPLPA DGQQDEVELR LGLEPEVPLE TARDGWDSKV EYFLAQVGFS VGLGNVWRFP  60
   61 YLCHQNGGGA FILLYVVLMA LVGVPLFFLE LAAGQSIRQG SIGVWRHISP KLVGIGYSSC 120
  121 VVCFFVALYY NVIIGWSIFY LGNSFQYPLP WEKCPTEGNS TVKECAASSP TAYFWYRKAL 180
  181 DITDSIDETG EFNFILTGCL LAAWVIVCLA MYKGIKSSGK VMYFSSVFPY VVLLCFLIRG 240
  241 VTLDGASEGI KFMFYPRLEI WADVQVWRQA ATQVFFALGL GFGSVIAYSS YNPRNNNCHR 300
  301 DAFTVSGVNF MTSVLATLVV FAVLGFRAKT IAAECVKRNL KALLKVTSSA PLPVLSINAS 360
  361 DVESISLDEY ANWYSTQGME LSISDYNITA CSLEDELRQG VEETGLAFIA FTEAMTLFPG 420
  421 SPFWSALFFL MLLNLGLSTM FGTMAGILTP LTDTFKTLRN HKLIFTICSC TVGFVIGLVF 480
  481 TQRCGNYFVT MFDDYSATLP LIIVVIFQTI SVSWVYGADR FLEDLKQMLN RPVPVIYKYL 540
  541 WKFVCPIAML GLLGASLLKM ILKRPEYSAW NREKASKEDL PYPDWALAVL IILIIIASLP 600
  601 VPIGYIHSLL LERLGQSPAD TEARYTPCAT TDTDLTPLST LPPSRDDLNS SHPLLEGNHN 660
  661 SHLQNGHIES VESSVL