YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148277662, gi...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.61
Transmembrane Helix	18	37	0.59
Non-Cytoplasmic	38	61	0.91
Transmembrane Helix	62	79	0.97
Cytoplasmic	80	89	0.77
Transmembrane Helix	90	109	0.89
Non-Cytoplasmic	110	169	0.83
Transmembrane Helix	170	187	0.58
Cytoplasmic	188	198	0.51
Transmembrane Helix	199	222	0.90
Non-Cytoplasmic	223	234	0.58
Transmembrane Helix	235	259	0.74
Cytoplasmic	260	270	0.52
Transmembrane Helix	271	293	0.59
Non-Cytoplasmic	294	311	0.61
Transmembrane Helix	312	336	0.90
Cytoplasmic	337	353	0.51
Transmembrane Helix	354	383	0.78
Non-Cytoplasmic	384	427	0.52
Transmembrane Helix	428	449	0.88
Cytoplasmic	450	467	0.78
Transmembrane Helix	468	487	0.89
Non-Cytoplasmic	488	496	0.68
Transmembrane Helix	497	518	0.88
Cytoplasmic	519	697	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTSEMKAV AMRVWRRLPV HVFVLASSLC LCQCGAEEDS AMENIVTEKK AEESHRQDSA  60
   61 DLLIFIMLLT LTILTIWLFK HRRFRFLHET GLAMIYGLLV GVVLRYAIHV PSDINNVTLS 120
  121 CHVNASPATL LVNVSGKFYE YTLKGEIGAN KVNDIQDNEM LRKVTFDPEV FFNILLPPII 180
  181 FHAGYSLKRR HFFRNLGSIL AYAFVGTVVS CFIIGALMYG CVMLMKKIGH LQDDFFFTDC 240
  241 LFFGAIVSAT DPVTVLAIFN ELQVDADLYA LLFGESVLND AVAVVLSSPI VAYQPTGDNS 300
  301 HTFEAMAMLK SFGIFLGVFS GSFALGVATG IVTALVTKFT KLRDFPLLET ALFFLMSWST 360
  361 FLLAEACGFT GVVAVLFCGM TQAHYTFNNL SPESQDRTKQ LFELLNFLAE NFIFSYMGLT 420
  421 LFTFQNHVFN PIFIVCAFLA VFLGRAANIY PLSFLLNLGR RNKISSNFQH MMMFAGLRGA 480
  481 MTFALSIRDT ATYARQMMFS TTLLVVFFTV WICGGGTTQM LSCQKIRVGV DTDHENSIGP 540
  541 DGVERRSTEQ ESAWLFRIWY NFDHNYLKPI LTHSGPPLTA TLPACCSPLA RCLTSPQAYE 600
  601 NEGELKNADS DLILNDGDIT LTYGDIAVST DGTGAHSSGV LMGGAAVNSD EALDRELAFG 660
  661 DHELVIRGTR LVLPMDDSEP PLTLDSHRQR HRNEFMS